HuBMAPR

‘HuBMAP’ data portal (https://portal.hubmapconsortium.org/) provides an open, global bio-molecular atlas of the human body at the cellular level. HuBMAPR package provides an alternative interface to access the data exploration and file retrieval via R.

Installation

HuBMAPR is a R package available in Bioconductor version 3.19 and later. You can install HuBMAPR by using the following commands in R session from Bioconductor:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HuBMAPR")

## Check Bioconductor installation
BiocManager::valid()

Additionally, you can install development version from GitHub:

BiocManager::install("christinehou11/HuBMAPR")

Use

View the article Explore Human BioMelecular Atlas Program Data Portal.