HuBMAP File Querying — bulk_data

bulk_data_transfer() takes a unique dataset or publication UUID to be used to query the HuBMAP API for information about available files.

Usage

bulk_data_transfer(uuid)

Arguments

uuid: character(1) corresponding to the HuBMAP Dataset UUID string. This is expected to be a 32-digit hex number. One unique Dataset UUID corresponds to one specific URL on Globus. Files corresponding to unique Dataset UUID are saved on Globus HuBMAP Public Collection webpage.

Value

bulk_data_transfer() display information about how to bulk download all files related to the dataset or publication.

Details

Additional details are provided on the HuBMAP consortium webpage, https://software.docs.hubmapconsortium.org/apis

Examples

# Globus available
uuid_globus <- "2d3dbd5e5a3d9d5cfc7a46f06815a4eb"
uuid_sra_dbGaP <- "5ba6a5b81e95c93c26a33980f6e957d7"
uuid_not_available <- "0eb5e457b4855ce28531bc97147196b6"

# bulk_data_transfer(*_globus)