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The list_batch_df dataset contains results from featureSelect() applied to the spatial transcriptomics data from the spatialLIBD package.

Usage

data(list_batch_df)

Format

A named list of data frames, where each element corresponds to a batch effect:

  • "gene_id": Gene identifier.

  • "gene_name": Gene name.

  • "dev_default": Deviance score without batch correction.

  • "dev_(batch name)": Deviance score with batch correction.

  • "rank_default": Rank of the gene based on deviance without batch correction.

  • "rank_(batch name)": Rank of the gene based on deviance with batch correction.

  • "d_diff": Relative change in deviance between default and batch-corrected models.

  • "nSD_dev_(batch name)": number of standard deviation of relative change in deviance for the batch.

  • "r_diff": Rank difference between default and batch-corrected models.

  • "nSD_rank_(batch name)": number of standard deviation of rank difference for the batch.