Access to SRT and snRNA-seq data from spatial_HPC project • humanHippocampus2024

Welcome to the humanHippocampus2024 package! This package helps to access the spatially-resolved transcriptomics (SRT) and single-nucleus RNA-sequencing (snRNA-seq) data from adjacent tissue sections of the anterior human hippocampus across ten adult neurotypical donors generated by Lieber Institute for Brain Development (LIBD) researchers and collaborators.

Installation

Please use R (version “4.4”) and Bioconductor 3.20 then enter:

if (!requireNamespace("BiocManager", quietly = TRUE)) {
    install.packages("BiocManager")
}

BiocManager::install("humanHippocampus2024")

## Check that you have a valid Bioconductor installation
BiocManager::valid()

The development version can be installed from GitHub:

install.packages("remotes")
remotes::install_github("christinehou11/humanHippocampus2024")

Please read Introduction to humanHippocampus2024 for detailed descriptions and tutorials.

Code of Conduct

Please note that the humanHippocampus2024 project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.